Transcript: lnc-KATNA1-2:1

Basic information

LNCipedia transcript ID: lnc-KATNA1-2:1 
LNCipedia gene ID: lnc-KATNA1-2
Location (hg38): chr6:149575705-149576124
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 362 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435273.1; RP1-12G14.6-001; OTTHUMT00000042648.1; NONHSAT115504
Alternative gene names: ENSG00000237502.1; RP1-12G14.6; OTTHUMG00000015792.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.9296 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KATNA1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KATNA1-2:1
4.0 lnc-KATNA1-2:1
4.1 lnc-KATNA1-2:1
5.0 lnc-KATNA1-2:1
5.1 lnc-RAET1G-11:2
5.2 lnc-KATNA1-2:1