Transcript: lnc-KATNAL2-2:1

Basic information

LNCipedia transcript ID: lnc-KATNAL2-2:1 
LNCipedia gene ID: lnc-KATNAL2-2
Ensembl Gene ID: ENSG00000261307
Ensembl Transcript ID: ENST00000565127
Location (hg38): chr18:47501172-47558383
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565127.1; RP11-157P23.2-001; OTTHUMT00000431609.1; NONHSAT059164
Alternative gene names: ENSG00000261307.1; RP11-157P23.2; OTTHUMG00000176186.1; AC102797.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.7091 non-coding 
CPAT coding probability 13.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KATNAL2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KATNAL2-2:1
4.0 lnc-KATNAL2-2:1
4.1 lnc-KATNAL2-2:1
5.0 lnc-KATNAL2-2:1
5.1 lnc-CTIF-19:1
5.2 lnc-KATNAL2-2:1