Transcript: lnc-KBTBD8-1:2

Basic information

LNCipedia transcript ID: lnc-KBTBD8-1:2 
LNCipedia gene ID: lnc-KBTBD8-1
Location (hg38): chr3:67302904-67304905
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 527 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00005536; ENST00000498247; ENST00000498247.1; RP11-85I21.1-002; OTTHUMT00000351998.1
Alternative gene names: XLOC_002691; linc-FAM19A1-2; ENSG00000241884; RP11-85I21.1; ENSG00000241884.1; OTTHUMG00000158741.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.6585 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KBTBD8-1:2 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KBTBD8-1:2
3.1 lnc-KBTBD8-1:2
4.0 lnc-KBTBD8-1:2
4.1 lnc-KBTBD8-1:2
5.0 lnc-KBTBD8-1:2
5.1 lnc-KBTBD8-1:2
5.2 lnc-KBTBD8-1:2