Transcript: lnc-KCNA1-97:21

Basic information

LNCipedia transcript ID: lnc-KCNA1-97:21 
LNCipedia gene ID: lnc-KCNA1-97
Ensembl Gene ID: ENSG00000256654
Ensembl Transcript ID: ENST00000540533
Location (hg38): chr12:5018458-5025559
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2172 bp
Exons: 4
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540533.2
Alternative gene names: ENSG00000256654.3; AC005906.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -113.2986 non-coding 
CPAT coding probability 42.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KCNA1-97:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CLEC4D-97:21
5.1 lnc-CLEC4D-97:21
5.2 lnc-KCNA1-97:21