Transcript: lnc-KCNA1-97:22

Basic information

LNCipedia transcript ID: lnc-KCNA1-97:22 
LNCipedia gene ID: lnc-KCNA1-97
Location (hg38): chr12:5018465-5021713
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000540533; ENST00000540533.1; RP11-429A20.3-001; OTTHUMT00000399211.1; NONHSAT025983
Alternative gene names: ENSG00000256790; RP11-429A20.3; ENSG00000256790.1; OTTHUMG00000168297.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.6655 non-coding 
CPAT coding probability 36.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KCNA1-97:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNA5-2:1
3.1 lnc-KCNA5-2:1
4.0 lnc-KCNA5-2:1
4.1 lnc-KCNA5-2:1
5.0 lnc-KCNA5-2:1
5.1 lnc-CLEC4D-97:22
5.2 lnc-KCNA1-97:22