Transcript: lnc-KCNA1-97:26

Basic information

LNCipedia transcript ID: lnc-KCNA1-97:26 
LNCipedia gene ID: lnc-KCNA1-97
Location (hg38): chr12:5023682-5025592
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 723 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000538202; ENST00000538202.1; RP11-429A20.4-001; OTTHUMT00000399212.1; NONHSAT025985
Alternative gene names: ENSG00000256654; RP11-429A20.4; ENSG00000256654.1; OTTHUMG00000168298.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.1147 non-coding 
CPAT coding probability 11.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNA1-97:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNA5-1:1
3.1 lnc-KCNA5-1:1
4.0 lnc-KCNA5-1:1
4.1 lnc-KCNA5-1:1
5.0 lnc-KCNA5-1:1
5.1 lnc-CLEC4D-97:26
5.2 lnc-KCNA1-97:26