Transcript: lnc-KCNA3-3:1

Basic information

LNCipedia transcript ID: lnc-KCNA3-3:1 
LNCipedia gene ID: lnc-KCNA3-3
Ensembl Gene ID: ENSG00000259834
Ensembl Transcript ID: ENST00000566942
Location (hg38): chr1:110653560-110657040
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3481 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566942.1; RP11-284N8.3-001; OTTHUMT00000431321.1; NONHSAT005142
Alternative gene names: ENSG00000259834.1; RP11-284N8.3; OTTHUMG00000175965.1; AL365361.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.9234 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNA3-3:1 no no no no

Available literature

  1. Guo (2015), Comprehensive analysis of lncRNA-mRNA co-expression patterns identifies immune-associated lncRNA biomarkers in ovarian cancer malignant progression., Sci Rep
  2. Koufariotis (2015), A catalogue of novel bovine long noncoding RNA across 18 tissues., PLoS ONE
  3. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNA3-1:1
4.0 lnc-KCNA3-3:1
4.1 lnc-KCNA3-3:1
5.0 lnc-KCNA3-3:1
5.1 lnc-KCNA3-3:1
5.2 lnc-KCNA3-3:1