Transcript: lnc-KCNA3-3:5

Basic information

LNCipedia transcript ID: lnc-KCNA3-3:5 
LNCipedia gene ID: lnc-KCNA3-3
Location (hg38): chr1:110653557-110674818
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 9496 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259834.1|MICT00000017233.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6581.568 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KCNA3-3:5 yes no no no

Available literature

  1. Guo (2015), Comprehensive analysis of lncRNA-mRNA co-expression patterns identifies immune-associated lncRNA biomarkers in ovarian cancer malignant progression., Sci Rep
  2. Koufariotis (2015), A catalogue of novel bovine long noncoding RNA across 18 tissues., PLoS ONE
  3. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-KCNA3-3:5
5.0 lnc-KCNA3-3:5
5.1 lnc-KCNA3-3:5
5.2 lnc-KCNA3-3:5