Transcript: lnc-KCNB2-5:2

Basic information

LNCipedia transcript ID: lnc-KCNB2-5:2 
LNCipedia gene ID: lnc-KCNB2-5
Location (hg38): chr8:72005677-72218865
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4801 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_4126_NR_033652
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.3061 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNB2-5:2 yes no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-383H13.1.1-5:1
4.0 lnc-RP11-383H13.1.1-5:1
4.1 lnc-RP11-383H13.1.1-5:1
5.0 lnc-RP11-383H13.1.1-5:1
5.1 lnc-SULF1-22:1
5.2 lnc-KCNB2-5:2