Transcript: lnc-KCNC2-2:24

Basic information

LNCipedia transcript ID: lnc-KCNC2-2:24 
LNCipedia gene ID: lnc-KCNC2-2
Ensembl Gene ID: ENSG00000257183
Ensembl Transcript ID: ENST00000552046
Location (hg38): chr12:74248637-74283669
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 529 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552046.1; RP11-274M17.3-001; OTTHUMT00000405902.1; NONHSAT029500
Alternative gene names: ENSG00000257183.1; RP11-274M17.3; OTTHUMG00000169794.1; AC090502.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.2985 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNC2-2:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNC2-3:1
4.0 lnc-KCNC2-3:1
4.1 lnc-KCNC2-2:24
5.0 lnc-KCNC2-2:24
5.1 lnc-LRRC10-39:25
5.2 lnc-KCNC2-2:24