Transcript: lnc-KCNC2-4:1

Basic information

LNCipedia transcript ID: lnc-KCNC2-4:1 
LNCipedia gene ID: lnc-KCNC2-4
Location (hg38): chr12:73211412-73942176
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000549058; ENST00000549058.1; RP11-314D7.4-001; OTTHUMT00000405453.1; NONHSAT029488
Alternative gene names: ENSG00000258109; RP11-314D7.4; ENSG00000258109.1; OTTHUMG00000169686.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8638 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNC2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNC2-2:1
3.1 lnc-KCNC2-4:1
4.0 lnc-KCNC2-4:1
4.1 lnc-KCNC2-4:1
5.0 lnc-KCNC2-4:1
5.1 lnc-LRRC10-37:1
5.2 lnc-KCNC2-4:1