Transcript: lnc-KCNE1B-5:4

Basic information

LNCipedia transcript ID: lnc-KCNE1B-5:4 
LNCipedia gene ID: lnc-KCNE1B-5
Ensembl Gene ID: ENSG00000277693
Ensembl Transcript ID: ENST00000616952
Location (hg38): chr21:10328936-10342737
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 225 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT081087; ENST00000604142.1; ENST00000616952.1
Alternative gene names: ENSG00000271308.1; AP003900.6; ENSG00000277693.1; AP003900.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNE1B-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSIG7-1:3
4.0 lnc-VSIG7-1:3
4.1 lnc-VSIG7-1:3
5.0 lnc-VSIG7-1:3
5.1 lnc-N6AMT1-146:4
5.2 lnc-KCNE1B-5:4