Transcript: lnc-KCNE4-3:1

Basic information

LNCipedia transcript ID: lnc-KCNE4-3:1 
LNCipedia gene ID: lnc-KCNE4-3
Ensembl Gene ID: ENSG00000235610
Ensembl Transcript ID: ENST00000440341
Location (hg38): chr2:223505476-223510933
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 787 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003117; ENST00000440341; ENST00000440341.1; AC013448.2-001; OTTHUMT00000330940.1; NONHSAT077149
Alternative gene names: XLOC_001881; linc-MRPL44; ENSG00000235610; AC013448.2; ENSG00000235610.1; OTTHUMG00000153377.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.4533 non-coding 
CPAT coding probability 7.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNE4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNE4-3:1
3.1 lnc-KCNE4-3:1
4.0 lnc-KCNE4-3:1
4.1 lnc-KCNE4-3:1
5.0 lnc-KCNE4-3:1
5.1 lnc-MOGAT1-16:1
5.2 lnc-KCNE4-3:1