Transcript: lnc-KCNJ11-5:1

Basic information

LNCipedia transcript ID: lnc-KCNJ11-5:1 
LNCipedia gene ID: lnc-KCNJ11-5
Location (hg38): chr11:17294217-17307753
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1694 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_439_chr11:17315763-17328093_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.4657 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNJ11-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNJ11-5:1
4.0 lnc-KCNJ11-5:1
4.1 lnc-KCNJ11-5:1
5.0 lnc-KCNJ11-5:1
5.1 lnc-SERGEF-12:1
5.2 lnc-KCNJ11-5:1