Transcript: lnc-KCNJ6-1:2

Basic information

LNCipedia transcript ID: lnc-KCNJ6-1:2 
LNCipedia gene ID: lnc-KCNJ6-1
Ensembl Gene ID: ENSG00000226012
Ensembl Transcript ID: ENST00000444977
Location (hg38): chr21:38237217-38238201
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 287 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444977; ENST00000444977.1; AP001434.2-001; OTTHUMT00000207201.1; NONHSAT082083
Alternative gene names: ENSG00000226012; AP001434.2; ENSG00000226012.1; OTTHUMG00000090613.1; AP001434.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNJ6-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DSCR4-1:1
3.1 lnc-DSCR4-1:1
4.0 lnc-DSCR4-1:1
4.1 lnc-DSCR4-1:1
5.0 lnc-DSCR4-1:1
5.1 lnc-CRYZL1-66:1
5.2 lnc-KCNJ6-1:2