Transcript: lnc-KCNK10-1:1

Basic information

LNCipedia transcript ID: lnc-KCNK10-1:1 
LNCipedia gene ID: lnc-KCNK10-1
Location (hg38): chr14:88132196-88161935
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7388 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022830; NONHSAT038195
Alternative gene names: XLOC_011100; linc-GALC-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.1655 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNK10-1:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNK10-1:1
3.1 lnc-KCNK10-1:1
4.0 lnc-KCNK10-1:1
4.1 lnc-KCNK10-1:1
5.0 lnc-KCNK10-1:1
5.1 lnc-GALC-17:1
5.2 lnc-KCNK10-1:1