Transcript: lnc-KCNK10-1:2

Basic information

LNCipedia transcript ID: lnc-KCNK10-1:2 
LNCipedia gene ID: lnc-KCNK10-1
Ensembl Gene ID: ENSG00000259998
Ensembl Transcript ID: ENST00000563140
Location (hg38): chr14:88158240-88160591
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2352 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563140.1; RP11-753D20.4-001; OTTHUMT00000421594.1; NONHSAT038976
Alternative gene names: ENSG00000259998.1; RP11-753D20.4; OTTHUMG00000172985.1; AL133279.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.9172 non-coding 
CPAT coding probability 8.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNK10-1:2 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNK10-1:2
4.0 lnc-KCNK10-1:2
4.1 lnc-KCNK10-1:2
5.0 lnc-KCNK10-1:2
5.1 lnc-GALC-17:2
5.2 lnc-KCNK10-1:2