Transcript: lnc-KCTD1-2:2

Basic information

LNCipedia transcript ID: lnc-KCTD1-2:2 
LNCipedia gene ID: lnc-KCTD1-2
Location (hg38): chr18:26747895-26754031
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 652 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026468; NONHSAT058759
Alternative gene names: XLOC_012796; linc-KCTD1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.3524 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCTD1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AQP4-1:1
3.1 lnc-AQP4-2:1
4.0 lnc-AQP4-2:1
4.1 lnc-AQP4-2:1
5.0 lnc-AQP4-2:1
5.1 lnc-SMAD2-147:1
5.2 lnc-KCTD1-2:2