Transcript: lnc-KCTD7-2:16

Basic information

LNCipedia transcript ID: lnc-KCTD7-2:16 
LNCipedia gene ID: lnc-KCTD7-2
Ensembl Gene ID: ENSG00000226824
Ensembl Transcript ID: ENST00000428557
Location (hg38): chr7:66654586-66669855
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 304 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428557.1; RP4-756H11.3-002; OTTHUMT00000345603.1; NONHSAT121217
Alternative gene names: ENSG00000226824.2; RP4-756H11.3; OTTHUMG00000156753.1; ENSG00000226824.6; AC006001.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.3264 non-coding 
CPAT coding probability 11.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCTD7-2:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RABGEF1-2:3
4.0 lnc-RABGEF1-2:3
4.1 lnc-RABGEF1-2:3
5.0 lnc-RABGEF1-2:3
5.1 lnc-TPST1-13:6
5.2 lnc-KCTD7-2:16