Transcript: lnc-KDM4C-19:7

Basic information

LNCipedia transcript ID: lnc-KDM4C-19:7 
LNCipedia gene ID: lnc-KDM4C-19
Ensembl Gene ID: ENSG00000229611
Ensembl Transcript ID: ENST00000412339
Location (hg38): chr9:6704471-6707780
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015647; ENST00000412339; ENST00000412339.1; RP11-390F4.10-001; OTTHUMT00000051681.1
Alternative gene names: XLOC_007275; linc-KDM4C-1; ENSG00000229611; RP11-390F4.10; ENSG00000229611.1; OTTHUMG00000019527.1; AL354707.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.1918 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KDM4C-19:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDM4C-1:2
3.1 lnc-KDM4C-2:2
4.0 lnc-KDM4C-2:2
4.1 lnc-KDM4C-1:17
5.0 lnc-KDM4C-1:17
5.1 lnc-RECK-327:7
5.2 lnc-KDM4C-19:7