Transcript: lnc-KHDC1L-2:1

Basic information

LNCipedia transcript ID: lnc-KHDC1L-2:1 
LNCipedia gene ID: lnc-KHDC1L-2
Location (hg38): chr6:72728227-72728741
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 388 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000429215.1; KCNQ5-AS2-001; OTTHUMT00000316068.1; NONHSAT113528
Alternative gene names: ENSG00000232868.1; KCNQ5-AS2; OTTHUMG00000150058.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.0088 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KHDC1L-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-257K9.7.1-2:1
4.0 lnc-RP11-257K9.7.1-2:1
4.1 lnc-RP11-257K9.7.1-2:1
5.0 lnc-RP11-257K9.7.1-2:1
5.1 lnc-CEP162-77:1
5.2 lnc-KHDC1L-2:1