Transcript: lnc-KHDRBS1-4:1

Basic information

LNCipedia transcript ID: lnc-KHDRBS1-4:1 
LNCipedia gene ID: lnc-KHDRBS1-4
Ensembl Gene ID: ENSG00000228634
Ensembl Transcript ID: ENST00000447478
Location (hg38): chr1:31933020-31933975
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 517 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447478; ENST00000447478.1; RP4-534N18.2-001; OTTHUMT00000011908.2; NONHSAT002152
Alternative gene names: ENSG00000228634; RP4-534N18.2; ENSG00000228634.1; OTTHUMG00000004135.2; AL136115.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.7689 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KHDRBS1-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL136115.1-1:1
3.1 lnc-AL136115.1-1:1
4.0 lnc-AL136115.1-1:1
4.1 lnc-AL136115.1-1:1
5.0 lnc-AL136115.1-1:1
5.1 lnc-TINAGL1-4:1
5.2 lnc-KHDRBS1-4:1