Transcript: lnc-KHDRBS3-4:4

Basic information

LNCipedia transcript ID: lnc-KHDRBS3-4:4 
LNCipedia gene ID: lnc-KHDRBS3-4
Ensembl Gene ID: ENSG00000253433
Ensembl Transcript ID: ENST00000519500
RefSeq ID: NR_126028
Location (hg38): chr8:134838069-134842637
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000519500; ENST00000519500.1; AC083843.3-001; OTTHUMT00000378290.1; NONHSAT129273; NR_126028; NR_126028.1
Alternative gene names: ENSG00000253433; AC083843.3; ENSG00000253433.1; OTTHUMG00000164326.1; NCRNA00250; AC083843.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.834 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KHDRBS3-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KHDRBS3-4:4
3.1 lnc-KHDRBS3-4:4
4.0 lnc-KHDRBS3-4:4
4.1 lnc-KHDRBS3-4:4
5.0 lnc-KHDRBS3-4:4
5.1 lnc-MYC-65:16
5.2 lnc-KHDRBS3-4:4