Transcript: lnc-KHDRBS3-6:2

Basic information

LNCipedia transcript ID: lnc-KHDRBS3-6:2 
LNCipedia gene ID: lnc-KHDRBS3-6
Ensembl Gene ID: ENSG00000272456
Ensembl Transcript ID: ENST00000606279
Location (hg38): chr8:134722947-134723949
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1003 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606279.1
Alternative gene names: ENSG00000272456.1; CTD-2342N23.3; AC087045.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.2758 non-coding 
CPAT coding probability 14.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KHDRBS3-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KHDRBS3-6:2
4.0 lnc-KHDRBS3-6:2
4.1 lnc-KHDRBS3-6:2
5.0 lnc-KHDRBS3-6:2
5.1 lnc-MYC-61:2
5.2 lnc-KHDRBS3-6:2