Transcript: lnc-KIF25-2:1

Basic information

LNCipedia transcript ID: lnc-KIF25-2:1 
LNCipedia gene ID: lnc-KIF25-2
Location (hg38): chr6:168229732-168240715
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011417; ENST00000434596; ENST00000434596.1; RP11-503C24.3-001; OTTHUMT00000043189.1; NONHSAT116143
Alternative gene names: XLOC_005544; linc-SMOC2-3; ENSG00000228361; RP11-503C24.3; ENSG00000228361.1; OTTHUMG00000016042.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.3542 non-coding 
CPAT coding probability 29.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIF25-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIF25-2:1
3.1 lnc-KIF25-2:1
4.0 lnc-KIF25-2:1
4.1 lnc-KIF25-2:1
5.0 lnc-KIF25-2:1
5.1 lnc-SYTL3-101:1
5.2 lnc-KIF25-2:1