Transcript: lnc-KIF26B-2:2

Basic information

LNCipedia transcript ID: lnc-KIF26B-2:2 
LNCipedia gene ID: lnc-KIF26B-2
Location (hg38): chr1:246111326-246113806
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 324 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000451926.1; RP11-36N20.1-002; OTTHUMT00000097501.1; NONHSAT010701
Alternative gene names: ENSG00000226876.1; RP11-36N20.1; OTTHUMG00000040511.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.221 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIF26B-2:2 yes no no no

Available literature

  1. Qiu (2014), Effects of oestrogen on long noncoding RNA expression in oestrogen receptor alpha-positive ovarian cancer cells., J. Steroid Biochem. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIF26B-2:2
4.0 lnc-KIF26B-2:2
4.1 lnc-KIF26B-2:2
5.0 lnc-KIF26B-2:2
5.1 lnc-OR2G3-21:3
5.2 lnc-KIF26B-2:2