Transcript: lnc-KIFAP3-2:4

Basic information

LNCipedia transcript ID: lnc-KIFAP3-2:4 
LNCipedia gene ID: lnc-KIFAP3-2
Ensembl Gene ID: ENSG00000231407
Ensembl Transcript ID: ENST00000446102
Location (hg38): chr1:170461317-170494540
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1363 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446102.1; RP11-576I22.2-003; OTTHUMT00000085224.1; NONHSAT007499
Alternative gene names: ENSG00000231407.1; RP11-576I22.2; OTTHUMG00000035227.1; ENSG00000231407.5; AL354732.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.7286 non-coding 
CPAT coding probability 7.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIFAP3-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIFAP3-2:4
4.0 lnc-KIFAP3-2:4
4.1 lnc-KIFAP3-2:4
5.0 lnc-KIFAP3-2:4
5.1 lnc-SH2D1B-91:15
5.2 lnc-KIFAP3-2:4