Transcript: lnc-KIFC2-1:8

Basic information

LNCipedia transcript ID: lnc-KIFC2-1:8 
LNCipedia gene ID: lnc-KIFC2-1
Ensembl Gene ID: ENSG00000254578
Ensembl Transcript ID: ENST00000525461
Location (hg38): chr8:144463817-144465101
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 429 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525461.1; CTD-2517M22.16-001; OTTHUMT00000385587.1; NONHSAT129756
Alternative gene names: ENSG00000254578.1; CTD-2517M22.16; OTTHUMG00000165651.1; AC084125.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.7707 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIFC2-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2517M22.16.1-1:1
4.0 lnc-CTD-2517M22.16.1-1:1
4.1 lnc-CTD-2517M22.16.1-1:1
5.0 lnc-CTD-2517M22.16.1-1:1
5.1 lnc-GPT-7:1
5.2 lnc-KIFC2-1:8