Transcript: lnc-KLF15-2:3

Basic information

LNCipedia transcript ID: lnc-KLF15-2:3 
LNCipedia gene ID: lnc-KLF15-2
Ensembl Gene ID: ENSG00000251448
Ensembl Transcript ID: ENST00000514281
Location (hg38): chr3:126288867-126294024
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 254 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005821; ENST00000514281; ENST00000514281.1; RP11-71E19.2-001; OTTHUMT00000370045.1; NONHSAT091670
Alternative gene names: XLOC_003235; linc-ALDH1L1-2; ENSG00000251448; RP11-71E19.2; ENSG00000251448.1; OTTHUMG00000162677.1; AC063919.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.7408 non-coding 
CPAT coding probability 10.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLF15-2:3 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF15-1:3
3.1 lnc-KLF15-2:3
4.0 lnc-KLF15-2:3
4.1 lnc-KLF15-2:3
5.0 lnc-KLF15-2:3
5.1 lnc-UROC1-5:3
5.2 lnc-KLF15-2:3