Transcript: lnc-KLF4-13:1

Basic information

LNCipedia transcript ID: lnc-KLF4-13:1 
LNCipedia gene ID: lnc-KLF4-13
Ensembl Gene ID: ENSG00000226047
Ensembl Transcript ID: ENST00000427833
Location (hg38): chr9:107117459-107121705
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 329 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427833; ENST00000427833.1; RP11-196I18.4-001; OTTHUMT00000053544.1; NONHSAT133860
Alternative gene names: ENSG00000226047; RP11-196I18.4; ENSG00000226047.1; OTTHUMG00000020443.1; AL807761.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.1528 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLF4-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF4-3:1
3.1 lnc-KLF4-3:1
4.0 lnc-KLF4-3:1
4.1 lnc-KLF4-3:1
5.0 lnc-KLF4-3:1
5.1 lnc-SLC46A2-84:1
5.2 lnc-KLF4-13:1