Transcript: lnc-KLF4-14:2

Basic information

LNCipedia transcript ID: lnc-KLF4-14:2 
LNCipedia gene ID: lnc-KLF4-14
Ensembl Gene ID: ENSG00000230782
Ensembl Transcript ID: ENST00000418656
Location (hg38): chr9:107102044-107102872
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 504 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418656; TCONS_00015865; ENST00000418656.1; RP11-508N12.2-002; OTTHUMT00000053546.1; NONHSAT133857
Alternative gene names: ENSG00000230782; XLOC_007820; linc-ABCA1-8; RP11-508N12.2; ENSG00000230782.1; OTTHUMG00000020444.1; AL807761.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.8635 non-coding 
CPAT coding probability 2.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLF4-14:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF4-4:2
3.1 lnc-KLF4-4:2
4.0 lnc-KLF4-4:2
4.1 lnc-KLF4-4:2
5.0 lnc-KLF4-4:2
5.1 lnc-SLC46A2-85:2
5.2 lnc-KLF4-14:2