Transcript: lnc-KLF7-1:13

Basic information

LNCipedia transcript ID: lnc-KLF7-1:13 
LNCipedia gene ID: lnc-KLF7-1
Ensembl Gene ID: ENSG00000234902
Ensembl Transcript ID: ENST00000417096
Location (hg38): chr2:207186717-207235883
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003487; ENST00000417096; ENST00000417096.1; AC007879.2-002; OTTHUMT00000336808.1; NONHSAT076589; ENST00000417096.5
Alternative gene names: XLOC_002473; linc-KLF7-2; ENSG00000234902; AC007879.2; ENSG00000234902.2; OTTHUMG00000154732.1; ENSG00000234902.6; AC007879.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.5696 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLF7-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF7-1:11
3.1 lnc-KLF7-1:13
4.0 lnc-KLF7-1:13
4.1 lnc-KLF7-1:13
5.0 lnc-KLF7-1:13
5.1 lnc-FN1-39:44
5.2 lnc-KLF7-1:13