Transcript: lnc-KLF7-1:3

Basic information

LNCipedia transcript ID: lnc-KLF7-1:3 
LNCipedia gene ID: lnc-KLF7-1
Location (hg38): chr2:207239864-207260085
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00003489; ENST00000432413.1; AC007879.5-001; OTTHUMT00000337086.1; NONHSAT076597
Alternative gene names: XLOC_002473; linc-KLF7-2; ENSG00000223725.1; AC007879.5; OTTHUMG00000154795.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.5865 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLF7-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF7-1:1
3.1 lnc-KLF7-1:3
4.0 lnc-KLF7-1:3
4.1 lnc-KLF7-1:3
5.0 lnc-KLF7-1:3
5.1 lnc-FN1-39:20
5.2 lnc-KLF7-1:3