Transcript: lnc-KLF7-1:9

Basic information

LNCipedia transcript ID: lnc-KLF7-1:9 
LNCipedia gene ID: lnc-KLF7-1
Ensembl Gene ID: ENSG00000240440
Ensembl Transcript ID: ENST00000440545
Location (hg38): chr2:207235299-207237875
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 361 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003488; ENST00000440545; ENST00000440545.1; AC007879.3-001; OTTHUMT00000336776.1; NONHSAT076593
Alternative gene names: XLOC_002473; linc-KLF7-2; ENSG00000240440; AC007879.3; ENSG00000240440.1; OTTHUMG00000154725.1; AC007879.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -231.3202 non-coding 
CPAT coding probability 4.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLF7-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF7-1:7
3.1 lnc-KLF7-1:9
4.0 lnc-KLF7-1:9
4.1 lnc-KLF7-1:9
5.0 lnc-KLF7-1:9
5.1 lnc-FN1-39:40
5.2 lnc-KLF7-1:9