Transcript: lnc-KLHDC4-2:3

Basic information

LNCipedia transcript ID: lnc-KLHDC4-2:3 
LNCipedia gene ID: lnc-KLHDC4-2
Ensembl Gene ID: ENSG00000226180
Ensembl Transcript ID: ENST00000538868
Location (hg38): chr16:87693537-87696147
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2611 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538868.2
Alternative gene names: ENSG00000226180.3; RP11-278A23.1; AC010536.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 40.2801 non-coding 
CPAT coding probability 97.77% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KLHDC4-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC010536.2-2:1
4.1 lnc-AC010536.2-2:1
5.0 lnc-AC010536.2-2:1
5.1 lnc-KLHDC4-2:2
5.2 lnc-KLHDC4-2:3