Transcript: lnc-KLHDC4-74:1

Basic information

LNCipedia transcript ID: lnc-KLHDC4-74:1 
LNCipedia gene ID: lnc-KLHDC4-74
Ensembl Gene ID: ENSG00000269935
Ensembl Transcript ID: ENST00000602388
Location (hg38): chr16:87600526-87602190
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1665 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT144309; ENST00000602388.1
Alternative gene names: ENSG00000269935.1; RP11-482M8.3; AC092720.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.2045 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHDC4-74:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC010536.2-1:2
4.0 lnc-AC010536.2-1:2
4.1 lnc-AC010536.2-1:2
5.0 lnc-AC010536.2-1:2
5.1 lnc-KLHDC4-5:1
5.2 lnc-KLHDC4-74:1