Transcript: lnc-KLHL11-1:1

Basic information

LNCipedia transcript ID: lnc-KLHL11-1:1 
LNCipedia gene ID: lnc-KLHL11-1
Ensembl Gene ID: ENSG00000259623
Ensembl Transcript ID: ENST00000560400
Location (hg38): chr17:41848518-41851447
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2930 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560400.1; RP11-156E6.1-001; OTTHUMT00000416526.1; NONHSAT053659
Alternative gene names: ENSG00000259623.1; RP11-156E6.1; OTTHUMG00000172022.1; AC125257.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.6411 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHL11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLHL11-1:1
4.0 lnc-KLHL11-1:1
4.1 lnc-KLHL11-1:1
5.0 lnc-KLHL11-1:1
5.1 lnc-BRCA1-47:1
5.2 lnc-KLHL11-1:1