Transcript: lnc-KLHL25-1:3

Basic information

LNCipedia transcript ID: lnc-KLHL25-1:3 
LNCipedia gene ID: lnc-KLHL25-1
Ensembl Gene ID: ENSG00000259762
Ensembl Transcript ID: ENST00000558637
Location (hg38): chr15:85750336-85752901
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558637.1; RP11-158M2.4-001; OTTHUMT00000417351.1; NONHSAT048103
Alternative gene names: ENSG00000259762.1; RP11-158M2.4; OTTHUMG00000172215.1; AC021739.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.6482 non-coding 
CPAT coding probability 9.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHL25-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLHL25-1:3
4.0 lnc-KLHL25-1:3
4.1 lnc-KLHL25-1:3
5.0 lnc-KLHL25-1:3
5.1 lnc-SEC11A-1:8
5.2 lnc-KLHL25-1:3