Transcript: lnc-KLHL25-1:6

Basic information

LNCipedia transcript ID: lnc-KLHL25-1:6 
LNCipedia gene ID: lnc-KLHL25-1
Ensembl Gene ID: ENSG00000259407
Ensembl Transcript ID: ENST00000558375
Location (hg38): chr15:85744109-85750281
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 964 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558375.1; RP11-158M2.3-001; OTTHUMT00000417350.1; NONHSAT048097
Alternative gene names: ENSG00000259407.1; RP11-158M2.3; OTTHUMG00000172214.1; AC021739.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.2534 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHL25-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLHL25-2:1
4.0 lnc-KLHL25-1:6
4.1 lnc-KLHL25-1:6
5.0 lnc-KLHL25-1:6
5.1 lnc-SEC11A-1:9
5.2 lnc-KLHL25-1:6