Transcript: lnc-KLHL31-2:5

Basic information

LNCipedia transcript ID: lnc-KLHL31-2:5 
LNCipedia gene ID: lnc-KLHL31-2
Ensembl Gene ID: ENSG00000227885
Ensembl Transcript ID: ENST00000453790
Location (hg38): chr6:53740749-53747022
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 850 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011508; ENST00000453790; ENST00000453790.1; RP11-79N23.1-001; OTTHUMT00000040966.1; NONHSAT113196
Alternative gene names: XLOC_005748; linc-KLHL31-1; ENSG00000227885; RP11-79N23.1; ENSG00000227885.1; OTTHUMG00000014883.1; AL590652.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.5014 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHL31-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLHL31-2:5
3.1 lnc-KLHL31-2:5
4.0 lnc-KLHL31-2:5
4.1 lnc-KLHL31-2:5
5.0 lnc-KLHL31-2:5
5.1 lnc-GSTA5-15:11
5.2 lnc-KLHL31-2:5