Transcript: lnc-KLHL32-1:1

Basic information

LNCipedia transcript ID: lnc-KLHL32-1:1 
LNCipedia gene ID: lnc-KLHL32-1
Ensembl Gene ID: ENSG00000224384
Ensembl Transcript ID: ENST00000442184
Location (hg38): chr6:96785137-96795821
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 481 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011341; ENST00000442184.1; RP3-417O22.3-001; OTTHUMT00000041565.1; NONHSAT114068
Alternative gene names: XLOC_005395; linc-KLHL32; ENSG00000224384.1; RP3-417O22.3; OTTHUMG00000015244.1; AL033379.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.2983 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHL32-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLHL32-1:1
3.1 lnc-KLHL32-1:1
4.0 lnc-KLHL32-1:1
4.1 lnc-KLHL32-1:1
5.0 lnc-KLHL32-1:1
5.1 lnc-PM20D2-58:1
5.2 lnc-KLHL32-1:1