Transcript: lnc-KLHL8-3:1

Basic information

LNCipedia transcript ID: lnc-KLHL8-3:1 
LNCipedia gene ID: lnc-KLHL8-3
Ensembl Gene ID: ENSG00000250572
Ensembl Transcript ID: ENST00000503666
Location (hg38): chr4:87261931-87266822
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 257 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007791; ENST00000503666; ENST00000503666.1; RP11-529H2.1-001; OTTHUMT00000363596.1; NONHSAT097300
Alternative gene names: XLOC_004009; linc-KLHL8; ENSG00000250572; RP11-529H2.1; ENSG00000250572.1; OTTHUMG00000161058.1; AC108516.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.3398 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHL8-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HSD17B13-1:1
3.1 lnc-HSD17B13-1:1
4.0 lnc-HSD17B13-1:1
4.1 lnc-HSD17B13-1:1
5.0 lnc-HSD17B13-1:1
5.1 lnc-SPARCL1-9:1
5.2 lnc-KLHL8-3:1