Transcript: lnc-KLRC4-KLRK1-2:1

Basic information

LNCipedia transcript ID: lnc-KLRC4-KLRK1-2:1 
LNCipedia gene ID: lnc-KLRC4-KLRK1-2
Ensembl Gene ID: ENSG00000256288
Ensembl Transcript ID: ENST00000539009
Location (hg38): chr12:10332861-10338292
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 649 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539009; ENST00000539009.1; RP11-277P12.10-001; OTTHUMT00000400264.1; NONHSAT026879
Alternative gene names: ENSG00000256288; RP11-277P12.10; ENSG00000256288.1; OTTHUMG00000168572.1; AC022075.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.6351 non-coding 
CPAT coding probability 2.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLRC4-KLRK1-2:1 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-277P12.7.1-2:1
3.1 lnc-RP11-277P12.7.1-2:1
4.0 lnc-RP11-277P12.7.1-2:1
4.1 lnc-RP11-277P12.7.1-2:1
5.0 lnc-RP11-277P12.7.1-2:1
5.1 lnc-M6PR-37:1
5.2 lnc-KLRC4-KLRK1-2:1