Transcript: lnc-KNOP1-1:2

Basic information

LNCipedia transcript ID: lnc-KNOP1-1:2 
LNCipedia gene ID: lnc-KNOP1-1
Ensembl Gene ID: ENSG00000261195
Ensembl Transcript ID: ENST00000565817
Location (hg38): chr16:19761560-19766070
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565817.1; CTD-2380F24.1-002; OTTHUMT00000436043.1; NONHSAT140907
Alternative gene names: ENSG00000261195.1; CTD-2380F24.1; OTTHUMG00000177256.1; AC027130.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.5356 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KNOP1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf88-1:2
4.0 lnc-C16orf88-1:2
4.1 lnc-C16orf88-1:2
5.0 lnc-C16orf88-1:2
5.1 lnc-MARF1-58:2
5.2 lnc-KNOP1-1:2