Transcript: lnc-KNSTRN-1:2

Basic information

LNCipedia transcript ID: lnc-KNSTRN-1:2 
LNCipedia gene ID: lnc-KNSTRN-1
Location (hg38): chr15:40371825-40372476
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 401 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000561261.1; LINC00594-001; OTTHUMT00000418632.1
Alternative gene names: ENSG00000259714.1; LINC00594; OTTHUMG00000172453.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.1363 non-coding 
CPAT coding probability 2.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KNSTRN-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DISP2-1:1
4.0 LINC00594:2
4.1 LINC00594:2
5.0 LINC00594:2
5.1 lnc-TMEM62-62:2
5.2 lnc-KNSTRN-1:2