Transcript: lnc-KPNA2-6:1

Basic information

LNCipedia transcript ID: lnc-KPNA2-6:1 
LNCipedia gene ID: lnc-KPNA2-6
RefSeq ID: NR_027418
Location (hg38): chr17:68101555-68135929
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 11193 bp
Exons: 6
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT055460; NR_027418; NR_027418.1
Alternative gene names: ; LINC00674


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 71.4056 coding 
CPAT coding probability 19.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KPNA2-6:1 no no no no

Available literature

  1. Wang (2014), Microarray expression profile analysis of long non-coding RNAs in human gastric cardiac adenocarcinoma., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KPNA2-1:2
4.0 LINC00674:1
4.1 LINC00674:1
5.0 LINC00674:1
5.1 lnc-TANC2-100:1
5.2 lnc-KPNA2-6:1