Transcript: lnc-KPNA2-6:23

Basic information

LNCipedia transcript ID: lnc-KPNA2-6:23 
LNCipedia gene ID: lnc-KPNA2-6
Ensembl Gene ID: ENSG00000274561
Ensembl Transcript ID: ENST00000613178
Location (hg38): chr17:68131462-68131907
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613178.1
Alternative gene names: ENSG00000274561.1; RP11-147L13.12; ; AC005332.6; AC005332.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -26.8205 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KPNA2-6:23 no no no no

Available literature

  1. Wang (2014), Microarray expression profile analysis of long non-coding RNAs in human gastric cardiac adenocarcinoma., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00674:23
4.1 LINC00674:23
5.0 LINC00674:23
5.1 lnc-TANC2-100:23
5.2 lnc-KPNA2-6:23