Transcript: lnc-KPNA2-6:3

Basic information

LNCipedia transcript ID: lnc-KPNA2-6:3 
LNCipedia gene ID: lnc-KPNA2-6
Location (hg38): chr17:68101567-68115518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 707 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435469; ENST00000435469.1; AC005332.1-001; OTTHUMT00000255408.1; NONHSAT055461
Alternative gene names: ENSG00000237854; AC005332.1; ENSG00000237854.1; OTTHUMG00000132303.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.8442 non-coding 
CPAT coding probability 6.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KPNA2-6:3 no no no no

Available literature

  1. Wang (2014), Microarray expression profile analysis of long non-coding RNAs in human gastric cardiac adenocarcinoma., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KPNA2-1:1
3.1 lnc-KPNA2-1:1
4.0 LINC00674:3
4.1 LINC00674:3
5.0 LINC00674:3
5.1 lnc-TANC2-100:3
5.2 lnc-KPNA2-6:3