Transcript: lnc-KRR1-1:1

Basic information

LNCipedia transcript ID: lnc-KRR1-1:1 
LNCipedia gene ID: lnc-KRR1-1
Location (hg38): chr12:75484124-75489820
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 812 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000547326.1; RP11-585P4.5-001; OTTHUMT00000405726.1; NONHSAT029535
Alternative gene names: ENSG00000257497.1; RP11-585P4.5; OTTHUMG00000169758.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.3079 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRR1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRR1-1:1
4.0 lnc-KRR1-1:1
4.1 lnc-KRR1-1:1
5.0 lnc-KRR1-1:1
5.1 lnc-LRRC10-47:1
5.2 lnc-KRR1-1:1