Transcript: lnc-KRR1-4:16

Basic information

LNCipedia transcript ID: lnc-KRR1-4:16 
LNCipedia gene ID: lnc-KRR1-4
Ensembl Gene ID: ENSG00000258088
Ensembl Transcript ID: ENST00000548702
Location (hg38): chr12:75694010-75698816
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 742 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548702.1; RP11-114H23.2-001; OTTHUMT00000405842.1; NONHSAT029543
Alternative gene names: ENSG00000258088.1; RP11-114H23.2; OTTHUMG00000169779.1; AC078820.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.589 non-coding 
CPAT coding probability 7.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRR1-4:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRR1-3:1
4.0 lnc-KRR1-3:1
4.1 lnc-KRR1-4:16
5.0 lnc-KRR1-4:16
5.1 lnc-LRRC10-48:12
5.2 lnc-KRR1-4:16